Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MGMDQQPNPPDVDAFLDSTLVGDDPALAAALAASDAAELPRIAVSAQQGKFLCLLAGAIQARRVLEIGTLGGFSTI-WLARGAGPQGRVVTLEYQPKHAEVARVNLQRAGVADRVEVVVGPALDTLPTLAGGPFDLVFIDADKENNVAYIQWAIR--LARRGAVIVVDNVIRGGGILAESDDADAVAARRTLQMMGEHPGLDATAIQTVGRKGWDGFALALVR
4YMG Chain:A ((50-178))
--------------------------------------------SRLQGSWMIFTARDRKPKRILEIGCYSGYSALAWYEGTRDTKAEIVTLEYSPKMIAASREAFKKYGVGDRVKLIEGPAENTLKTLE-GEFDLIFVDANKDGYAGYVKTILDQGLLSANGIILCDNVFARG-------------------------------------------------
General information:
TITO was launched using:
RESULT:
Template:
4YMG.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -92140 for 953 contacts (-96.7/contact) +
2D Compatibility (PS) -14250 + (NN) -8922 + (LL) 5656
1D Compatibility (HY) -12000 + (ID) 2350
Total energy: -124006.0 ( -130.12 by residue)
QMean score : 0.514
(partial model without unconserved sides chains):
PDB file :
Tito_4YMG.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4YMG-query.scw
PDB file :
Tito_Scwrl_4YMG.pdb
: