Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MAFPRTLAILAAAAALVVACSHGGTPTGSSTTSGASPATPVAVPVPRSCAEPAGIPALLSPRDKLAQLLVVGVRDAADAQAVVTNYHVGGILIGSDTDLTIFDGALAEIVAGGGPLPLAVSVDEEGGRVSRLRSLIGGTG-PSARELAQTRTVQQVRDLARDRGR----QMRKLGITIDFAPVVDVTDAPDDTVIGDRSFGSDPATVTAYAGAYAQGLRDAGVLPVLKHFPGHGRGSGDSHNGGVTTP-PLDDLVGDDLVPYRTLVTQAPV-GVMVGHLQVPGLTGSEPASLSKAAVN-LLRTGTGYGAPPFDGPVFSDDLSGMAAISDRFGVSEAVLRTLQAGADIALWVTTKE-VPAVLDRLEQALRAGELPMSAVDRSVVRVATMKGPNPGCGR |
| 4GVG Chain:A ((57-292)) | ---------------------------------------------------------------------------------------------------------------------LVVAVDQEGGRVQRFRE--GFTRLPAAQSFFALHGLEEGGRLAQEAGWLMASEMIAMDIDISFAPVLDVGHIS--AAIGERSYHADPAKALAMATRFIDGMHDAGMKTTGKHFPGHGAVT---HKETPCDPRPETDIRGKDMSVFRTLISENKLDAIMPAHVIYRAID-PRPASGSPYWLKTVLRQELG-----FDGVIFSDDLS-----MGSY--AERAQASLDAGCDMILVCNNRKGAVSVLDNL--------------------------------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 4GVG.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -77602 for 1819 contacts (-42.7/contact) +
2D Compatibility (PS) -24116 + (NN) -16299 + (LL) 8220
1D Compatibility (HY) -14000 + (ID) 4200
Total energy: -127997.0 ( -70.37 by residue)
QMean score : 0.428
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