Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MDATPNAVELTVDNAWFIAETIGAGTFPWVLAITMPYSDAAQRGAFVDRQRDELTRMGLLS-PQGVINPAVADWIKVVCFPDRWLDLRYVGPASADGACELLRGIVALRT---GTGKTSNKTG-NGVVALRNAQLVTFTAMDIDDPRALVPILGVGL----AHRPPARFDEFSLPTRVGARADERLRSGVPLGEVVDYLGIPASARPVVESVFSGPRSYVEIVAGCNRDGRHTTTEVGLSIVDTSAGRVLVSPSRAFDGEWVSTFSPGTPFAIAVAIQTLTACLPDGQWFPGQRVSRDFSTQSS
5DLB Chain:A ((22-301))
----PNAVELTVENAWFIAEMVGAGTFPWVLAITTPYSDEAQRSAFFARQRDELTQLGLLSSD-GVVNPAVAEWIKVVCFPERWLDLRYVGP--------LLRGIVAQSAGIM----------FNTVVALRNAQLVTFTAMDID---D-PRALVPVLGVGLSARPPARFEEFSMPMRVGARADERLRSGESLDEVLDYLGIPVSARPVVQAVFSGPRSYVEIVAGCNRDGEHTTTDVGLSIVDTTAGRVLVSPSRAFDGEWVSTFSAGTPFATAVAIDQLIANLPDGQWF--------------
General information:
TITO was launched using:
RESULT:
Template:
5DLB.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -232841 for 1928 contacts (-120.8/contact) +
2D Compatibility (PS) -27713 + (NN) -13199 + (LL) 800
1D Compatibility (HY) -30800 + (ID) 10300
Total energy: -314053.0 ( -162.89 by residue)
QMean score : 0.545
(partial model without unconserved sides chains):
PDB file :
Tito_5DLB.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-5DLB-query.scw
PDB file :
Tito_Scwrl_5DLB.pdb
: