Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MDSAMARAIRSGDDAEVADGLTRREHDILAFERQWWKFAGVKEEAIKELF----SMSATRYYQVLNALVDRPEALAADPMLVKRLRRLRASRQKARAARRLGFEVT
1P6R Chain:A ((4-55))
-----------------IPQISDAELEVMKVIWK---HSSINTNEVIKELSKTSTWSPKTIQTMLLRLIKKG----------------------------------
General information:
TITO was launched using:
RESULT:
Template:
1P6R.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -17127 for 259 contacts (-66.1/contact) +
2D Compatibility (PS) -5499 + (NN) -3289 + (LL) 5116
1D Compatibility (HY) -4000 + (ID) 200
Total energy: -24999.0 ( -96.52 by residue)
QMean score : 0.563
(partial model without unconserved sides chains):
PDB file :
Tito_1P6R.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1P6R-query.scw
PDB file :
Tito_Scwrl_1P6R.pdb
: