Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MTGPPRLSSDLDALLRRVAGHDQAAFAEFYDHTKSRVYGLVMRVLRDTGYSEETTQEIYLEVWRNASEFDSAKGSALAWLLTMAHRRAVDRVRCEQAGNQREVRYGAANVDPASDVVADLAIAGDERRRVTECLKALTDTQRQCIELAYYGGLTYVEVSRRLAANLSTIKSRMRDALRSLRNCLDVS
4CXF Chain:A ((5-187))
--------DADRILAAQAASGNQRAFGQLVARHGVALAQAARSFGIPETDVDDVVQDTFVAAWHALDDFDP-DRPFRAWLFRIGLNKMRDLYRFRR-------------------------AARLELARVASTLGKLDTGSREVIVLTAIVGMSQPEAAAVLGLSVKAVEGRIGRARAKLSALLDA-
General information:
TITO was launched using:
RESULT:
Template:
4CXF.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -79277 for 1145 contacts (-69.2/contact) +
2D Compatibility (PS) -16796 + (NN) -8760 + (LL) 1596
1D Compatibility (HY) -4000 + (ID) 1550
Total energy: -108787.0 ( -95.01 by residue)
QMean score : 0.574
(partial model without unconserved sides chains):
PDB file :
Tito_4CXF.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4CXF-query.scw
PDB file :
Tito_Scwrl_4CXF.pdb
: