Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MVGDCPRSRTVRWSWDTGHVTAEPQPTPRPAKPRLLQDGRDMFWSLAPLVVGCILLAGLVGMCSFQLGGTKRGPIPSYDAAQALRADAKTLGFPIRLPQLPGGWTPNSGGRGGIENGRADPATGQRRNAATSIVGFISPTGRYLSLTQSNADEDKLVGSIHPSMYPTGTVDVGGTRWVVYEGSDENGAVEPVWTTRLTGPGGATQLAITGAGSIDQFRTLASATQSQPPLPAR |
1NLR Chain:A ((128-160)) | ------------------------------------------------------------------------------------------------------------------------------------------------------------VGPIQPIGSPVGTASVGGRTWEVWSGGNGSNDV-------------------------------------------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 1NLR.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -3287 for 134 contacts (-24.5/contact) +
2D Compatibility (PS) -3816 + (NN) -4427 + (LL) 7936
1D Compatibility (HY) -1200 + (ID) 700
Total energy: -5494.0 ( -41.00 by residue)
QMean score : 0.081
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