Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MRHTRFHPIKLAWITAVVAGLMVGVATPADAEPGQWDPTLPALVSAGAPGDPLAVANASLQATAQATQTTLDLGRQFLGGLGINLGGPAASAPSAATTGASRIPRANARQAVEYVIRRAGSQMGVPYSWGGGSLQGPSKGVDSGANTVGFDCSGLVRYAFAGVGVLIPRFSGDQYNAGRHVPPAEAKRGDLIFYGPGGGQHVTLYLGNGQMLEASGSAGKVTVSPVRKAGMTPFVTRIIEY
4JXB Chain:A ((3-132))
----------------------------------------------------------------------------------------------------------DYQQITDVVIARGLSQRGVPFSWAGGGISGPTRGTGTGINTVGFDASGLIQYAYAGAGLKLPRSSGQMYKVGQKVLPQQARKGDLIFYGPEGTQSVALYLGKGQMLEV---GDVVQVSPVRTNGMTPYLVRVL--
General information:
TITO was launched using:
RESULT:
Template:
4JXB.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -80497 for 1040 contacts (-77.4/contact) +
2D Compatibility (PS) -14408 + (NN) -9872 + (LL) 5840
1D Compatibility (HY) -11200 + (ID) 3550
Total energy: -113687.0 ( -109.31 by residue)
QMean score : 0.653
(partial model without unconserved sides chains):
PDB file :
Tito_4JXB.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4JXB-query.scw
PDB file :
Tito_Scwrl_4JXB.pdb
: