Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MMP--LILLPAVDVVEGRAVRLVQGKAGSQTEYGSAVDAALGWQRDGAEWIHLVDLDAAFGRGSNHELLAEVVGKLDVQVELSGGIRDDESLAAALATGCARVNVGTAALENPQWCARVIGEHGDQVAVGLDVQIIDGEHRLRGRGWETDGGDLWDVLERLDSEGCSRFVVTDITKDGTLGGPNLDLLAGVADRTDAPVIASGGVSSLDDLRAIATLTHRGVEGAIVGKALYARRFTLPQALAAVRD
4W9T Chain:A ((7-244))
---NKLELLPAVDVRDGQAVRLVHGVSGSETSYGSPLEAALAWQASGAEWLHLVDLDAAFGTGDNRALVAEITGAMDIKVELSGGIRDDASLAAALATGCTRVNLGTAALETPEWAAKAIAEHGDRIAVGLDVR----GTTLKGR-----GGDLYETLARLDSEGCARYVVTDIGKDGTLTGPNLELLKNVCAATDRPVVASGGISSLEDLRALAALVPQGVEGAIVGKALYAKAFTLEEALKVV--
General information:
TITO was launched using:
RESULT:
Template:
4W9T.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -163573 for 2056 contacts (-79.6/contact) +
2D Compatibility (PS) -25486 + (NN) -12465 + (LL) 524
1D Compatibility (HY) -25200 + (ID) 7950
Total energy: -234150.0 ( -113.89 by residue)
QMean score : 0.728
(partial model without unconserved sides chains):
PDB file :
Tito_4W9T.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4W9T-query.scw
PDB file :
Tito_Scwrl_4W9T.pdb
: