Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MLATIDKFAYEKSMLINVGDEKGTLLDAAVRRADPALALELGTYLGYGALRIAR-AAPEARVYSVELAEANASNARRIWAHAGVDDRVVCVVGTIGDGGRTLDALTEHGFATGTLDFVFLDHDKKAYLPDLQSILDRGWLHPGSIVVADNVRVPGAPKYRAYMRRQQGMSWNTIEHKTHLEYQTLVPDLVLESEYLG
5FHQ Chain:A ((23-202))
VLEAIDTYCTQKEWAMNVGDAKGQIMDAVIREYSPSLVLELGAYCGYSAVRMARLLQPGARLLTMEMNPDYAAITQQMLNFAGLQDKVTILNGASQD----LIPQLKKKYDVDTLDMVFLDHWKDRYLPDTLLLEKCGLLRKGTVLLADNVIVPGTPDFLAYVRGSS--SFECTHYSSYLEYMKVV-----------
General information:
TITO was launched using:
RESULT:
Template:
5FHQ.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -87414 for 1400 contacts (-62.4/contact) +
2D Compatibility (PS) -19410 + (NN) -5135 + (LL) 448
1D Compatibility (HY) -17600 + (ID) 3500
Total energy: -132611.0 ( -94.72 by residue)
QMean score : 0.527
(partial model without unconserved sides chains):
PDB file :
Tito_5FHQ.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-5FHQ-query.scw
PDB file :
Tito_Scwrl_5FHQ.pdb
: