Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MLDYLRDAAEIYRRSFAVIRAEADLARFPADVARVVVRLIHTCGQVDVAEHVAYTDDVVARAGAALAAGAPVLCDSSMVAAGITTSRLPA-DNQIVSLVADPRATELAARRQTTRSAAGVELCAER--LPGAVLAIGNAPTALFRLLELVDEGAPPPAAVLGGPVGFVGSAQAKEELIERPRGMSYLVVRGRRGGSAMAAAAVNAIASDRE
1V9C Chain:B ((8-200))
----------IEEESFRIVDQEAGPHGFSPLEWPVVRRMIHATADFEYKALTRFSQGAVEAGLKAIQAGARILVDARMIACGLNPERLRLFGNEVVELLAHPEVVARAKAT--TRAEAAVAYAWEKGLLDGAIVGVGNAPTFLLALVEAIRQGA-RPALVLGMPVGFVNVLEAKRALMEAP--VPWIVTEGRKGGSTLVVAALHAL-----
General information:
TITO was launched using:
RESULT:
Template:
1V9C.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -148386 for 1597 contacts (-92.9/contact) +
2D Compatibility (PS) -21242 + (NN) -12927 + (LL) 1196
1D Compatibility (HY) -15600 + (ID) 3550
Total energy: -200509.0 ( -125.55 by residue)
QMean score : 0.674
(partial model without unconserved sides chains):
PDB file :
Tito_1V9C.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1V9C-query.scw
PDB file :
Tito_Scwrl_1V9C.pdb
: