Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MTEPDVAGAPASKPEPASTGAASAAQLSGYSRVLLKLGGEMFGG-GQVGLDPDVVAQVARQIADVVRGGVQIAVVIGGGNFFRGAQLQQLGM-ERTRSDYMGMLGTVMNSLALQDFLEKEGIVTRVQTAITMGQVAEPYLPLRAVRHLEKGRVVIFGAGMGLPYFSTDTTAAQRALEIGADVVLMAKAVDGVFAEDPRVNPEAELLTAVSHREVLDRGLRVADATAFSLCMDNGMPILVFNLLTDGNIARAVRGEKIGTLVTT
4A7W Chain:A ((8-233))
------------------------------KRVLVKFSGEALAGDNQFGIDIHVLDHIAKEIKSLVENDIEVGIVIGGGNII---------IIRRTSGDYMGMLATVINAVAMQEALEHIGLDTRVQSAIEIKEICESYIYRKAIRHLEKGRVVIFGAGTGNPFFTTDTAATLRAIEIGSDLIIKATKVDGIYDKDPNKFKDAKKLDTLSYNDALIGDIEVMDDTAISLAKDNKLPIVVCNMFKKGNLLQVIKHQQ-------
General information:
TITO was launched using:
RESULT:
Template:
4A7W.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -173879 for 1735 contacts (-100.2/contact) +
2D Compatibility (PS) -23628 + (NN) -11751 + (LL) 2220
1D Compatibility (HY) -22800 + (ID) 4800
Total energy: -234638.0 ( -135.24 by residue)
QMean score : 0.635
(partial model without unconserved sides chains):
PDB file :
Tito_4A7W.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4A7W-query.scw
PDB file :
Tito_Scwrl_4A7W.pdb
: