Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MGTCPCESSERNEPVSRVSGTNEVSDGNETNNPAEVSDGNETNNPAEVSDGNETNNPAPVSRVSGTNEVSDGNETNNPAPVSRVSGTNEVSDGNETNNPAPVTEKPLHPHEPHIEILRGQPTDQELAALIAVLGSISGSTPPAQPEPTRWGLPVDQLRYPVFSWQRITLQEMTHMRR |
1GKS Chain:A ((60-76)) | ----------------------------------------------------------------------------------------------------------------------GRADREDLVKAIEYMLS------------------------------------------ |
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General information:
TITO was launched using:
| RESULT:
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Template: 1GKS.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -1042 for 64 contacts (-16.3/contact) +
2D Compatibility (PS) -2107 + (NN) -3433 + (LL) 3864
1D Compatibility (HY) -1200 + (ID) 200
Total energy: -4118.0 ( -64.34 by residue)
QMean score : 0.366
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