Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MQVHVVDHPLAAARLTTLRDERTDNAGFRAALRELTLLLIYEATRDAPCEPVPIRTPLA-ETVGSRLT--KPPLLVPVLRAGLGMVDEAHAALPEAHVGFVGVARDEQTHQPVP-------YLDSLPDDLTDV-PVMVLDPMVATGGSMTHTLGLLISRGAADITVLCVVAAPEGIAALQKAAPNVRLFTAAIDEGLNEVAYIVPGLGDAGDRQFGPR
1VST Chain:A ((2-216))
-PLYVIDKPITLHILTQLRDKYTDQINFRKNLVRLGRILGYEISNTLDYEIVEVETPLGVKTKGVDITDLNNIVIINILRAAVPLVEGLLKAFPKARQGVIGASRVEVDGKEVPKDMDVYIYYKKIPDIRAKVDNVIIADPMIATASTMLKVLEEVVKANPKRIYIVSIISSEYGVNKILSKYPFIYLFTVAIDPELNNKGYILPGLGDAGDRAFG--
General information:
TITO was launched using:
RESULT:
Template:
1VST.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -162421 for 1602 contacts (-101.4/contact) +
2D Compatibility (PS) -21664 + (NN) -5118 + (LL) 168
1D Compatibility (HY) -19600 + (ID) 3700
Total energy: -212335.0 ( -132.54 by residue)
QMean score : 0.487
(partial model without unconserved sides chains):
PDB file :
Tito_1VST.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1VST-query.scw
PDB file :
Tito_Scwrl_1VST.pdb
: