Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MQQWVDCEFTGRDFRDEDLSRLHTERAMFSECDFSGVNLAESQHRGSAFRNCTF----------ERTTLWHSTFAQCSMLGSVFVACRLRPLTLDDVDFTLAVLGGNDLRGLNLTGCRLRETSLV-----DTDLRKCVLRGADLSGARTTGARLDDADLRGATVDPVLWRTASLVGARVDVDQAVAFAAAHGLCLAGG
2XT4 Chain:A ((10-165))
-------DYCGESFVSEDRSGQSLESIRFEDCTFRQCNFTEAELNRCKFRECEFVDCNLSLISIPQTSFMEVRFVDCKMLGVNWTSAQAGALSFERCILNDSLFYGLYLAGVKMVECRIHDANFTEADCEDADFTQSDLKGSTFHNTKLTGASFIDA-----------------------------------------
General information:
TITO was launched using:
RESULT:
Template:
2XT4.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -96810 for 999 contacts (-96.9/contact) +
2D Compatibility (PS) -13948 + (NN) 2448 + (LL) 3684
1D Compatibility (HY) -8800 + (ID) 1800
Total energy: -115226.0 ( -115.34 by residue)
QMean score : 0.361
(partial model without unconserved sides chains):
PDB file :
Tito_2XT4.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2XT4-query.scw
PDB file :
Tito_Scwrl_2XT4.pdb
: