Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MKRFWENVGKPNDTTDGRGTTSLAMTPISQTPGLLAEAMVDLGAIEHNVR--VLREHAGHAQLMAVVKADGYGHGATRVAQTALGAGAAELGVATVDEALALRADGITAPVLAWLHPPGIDFGPALLA-DVQVAVSSLRQLDELLHAVRRTGRTAT-VTVKVDTGLNRNG-VGPAQFPAMLTALRQAMAEDAVRLRGLMSHMVYADKPDDSINDVQAQRFTAFLAQAREQGVRFEVAHLSNSSATMARPDLTFDLVRPGIAVYGLSPV--PALGDMGLVPAMTVKCAVALVKSIRAGEGVSYGHTWIAPRDTNLALLPIGYADGVFRSLGGRLEVLINGRRCPGVGRICMDQFMVDLGPGPLDVAEGDEAILFGPGIRGEPTAQDWADLVGTIHYEVVTSPRGRITRTYREAENR |
3E6E Chain:A ((13-370)) | ---------------------------------------IDTQAITENVQKECQRLPEGTA-LFAVVKANGYGHGAVESAKAAKKGGATGFCVALLDEAIELREAGVQDPILI-LSVVDLAYVPLLIQYDLSVTVATQEWLEAALQQLTPESNTPLRVHLKVDTGMGRIGFLTPEETK---QAVRFVQSHKEFLWEGIFTHFSTADEIDTSYFEKQAGRFKAVLA-VLEELPRY--VHVSNSATALWHPDVPGNMIRYGVAMYGLNPSGNKLAPSYALKPALRLTSELIHVKRLAAGEGIGYGETYVTEAEEWIGTVPIGYADGWLRHLQG-FTVLVNGKRCEIVGRVCMDQCMIRLAE---EVPVGPVVTLVGKDGNEENTLQMVAEKLETIHYEVACTFSQRIPREY------ |
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General information:
TITO was launched using:
| RESULT:
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Template: 3E6E.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -216120 for 2897 contacts (-74.6/contact) +
2D Compatibility (PS) -38156 + (NN) -9424 + (LL) 3416
1D Compatibility (HY) -28400 + (ID) 6850
Total energy: -295534.0 ( -102.01 by residue)
QMean score : 0.330
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