Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MPVLALRLTALAALVISVSGCVMEAYGSRARSDAQSWIGLPIQDVIKRFGEPERVTGDAARQKYVWKEYENYSHDYDYTYYEQGHGNTPNSSVLNQKTGTANQSGYYTCIYEFFADASGRVVDATARGECR
2DJS Chain:A ((40-69))
--------------------------------------------------------------------------DYEIRYYEKEH-NEFNSSMARSQTNTARIDGLRPGMVYVVQVRARTVAGYGKFSGKM
General information:
TITO was launched using:
RESULT:
Template:
2DJS.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -152 for 125 contacts (-1.2/contact) +
2D Compatibility (PS) -3418 + (NN) -3738 + (LL) 5688
1D Compatibility (HY) -1600 + (ID) 700
Total energy: -3920.0 ( -31.36 by residue)
QMean score : 0.341
(partial model without unconserved sides chains):
PDB file :
Tito_2DJS.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2DJS-query.scw
PDB file :
Tito_Scwrl_2DJS.pdb
: