Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MKATYSMLSQVTFPLAEAGYYVVPVALADETFRQNGLTSAGDVHQVSPAKLREIYGADAALYVTVSDYGTRYMVISSATIVTASAKLVDLRSGTTLWTGSATASSEEGNGGNNGGLVGMLITAAVKQIINSSVEDAGYPIAGMTSARLLSAGQPGGLLYGPRSPRYGSD |
1F11 Chain:B ((60-135)) | ----------------------------NQKFKGKATLTVDKSSSTAYMQL---TSEDSAVYYCANDYGSTYAYWGQGTLVTVSAAKTTPPSVYPLAPGSAAQTNSMVTLGCLVKGYFPEPVTVTWNSGSLSSGVHTFPAVLQSDLYTLSSSVTVPSSPRPSETVTCNV |
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General information:
TITO was launched using:
| RESULT:
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Template: 1F11.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -9952 for 282 contacts (-35.3/contact) +
2D Compatibility (PS) -7857 + (NN) -1133 + (LL) 3132
1D Compatibility (HY) -800 + (ID) 900
Total energy: -17510.0 ( -62.09 by residue)
QMean score : 0.006
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