Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSIHSSGGVDMKKTASAVWQGGLKDGKGTLSTESGALKDNPYGFNTRFEGAPGTNPEELIGAAHAGCFSMALSMMLGEAGLT-AERIETRAEVTLDKQSDGFAITAVHLVLRARVPGADAQTFEQIANKAKAGCPVSKVL--NAKISLDASLDG
1N2F Chain:A ((42-142))
------------------------------------------------QGGAATNPEQLFAAGYSACFIGAMKFVAGQRKQTLPADASITGKVGIGQIPGGFGL---EVELHINLPGMEREAAEALVAAAHQVCPYSNATRGNIDVRLNVSV--
General information:
TITO was launched using:
RESULT:
Template:
1N2F.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -58925 for 663 contacts (-88.9/contact) +
2D Compatibility (PS) -10500 + (NN) -3960 + (LL) 1440
1D Compatibility (HY) -4800 + (ID) 1300
Total energy: -78045.0 ( -117.71 by residue)
QMean score : 0.464
(partial model without unconserved sides chains):
PDB file :
Tito_1N2F.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1N2F-query.scw
PDB file :
Tito_Scwrl_1N2F.pdb
: