Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MSAPLPPRGRGTASNPLNRFAPTHSEAFDDGWEQDVPPIQLTEVREEIARTVISRNQSPDLPFDRSINPYRGCEHGCIYCYARPSHAYWDLSPGIDFETRLIAKSNVASALEQELSKP-GYRCAPINLGANTDPYQ-PLER-ERRLTRQVLEVLLRFRH--PLT-IVTKGSLILRDLDLLRELAEQN--LVAVMISLTTLDDELKRILEPRAAAPSARLRAIRTLSGN--GIPVGVLCSPMIPMVNDMELERLLQAARDAGARSAAYMLLRLPREVGPLFEEWLAAHYPQRAEHVMSLVRQCRGGEVYDSRFGHRFRGQGPFADLLAQRFAVAMKRLGLDRREGFGLDCSRFAVPGAQMALF |
2QGQ Chain:A ((4-193)) | --------------------------------------------------------------PYAYVKISDGC-------------GSL--------------RSRSIEDITREVEDLLKEGKKEIILVAQ-DTTSYGIDLYRKQALPDLLRRLNSLNGEFWIRVMYLHPDHLTE--EIISAMLELDKVVKYFDVPVQHGSDKILKLMGRTK-SSEELKKMLSSIRERFPDAVLRTSIIVGFPGETEEDFEELKQFVEEIQFDKLGAFVYSDKVDPEMAKRRQEELLLLQAEISNSRLDRFVGKKLKFLVEGKEGKFLVGRTWTEAPEVDGVVFVRGKGKIGDFLEVVIKEHDEYDMWGSVI |
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General information:
TITO was launched using:
| RESULT:
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Template: 2QGQ.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -73509 for 1199 contacts (-61.3/contact) +
2D Compatibility (PS) -17631 + (NN) -4641 + (LL) 4204
1D Compatibility (HY) -4400 + (ID) 800
Total energy: -96777.0 ( -80.71 by residue)
QMean score : 0.381
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