Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MTLYRLHEADLEIPDAWQDQSINIFKLP---A--SGPAREASFVISRDASQGDAPFADYVARQLENAEKQLPGFKLHKRWDINIHGHAAVLLDYQWQRE-GRDLMLRQVFIERR----PAVLITTLTTTPADLPHHEPAWKQAMQTLVPRPTPS
3LYD Chain:A ((19-161))
-------GFTVPIPETWQPDPTMGTQFAARPHTPPQ-GFTPNIIGTVRRAATGA-LHNQRT-ELDQRATQLPDYAERGRTETTVDGFPAYHIEYAYRHHGTITIAQMITLVEVSHPHAVDIIQLTATCAGDQTADYWDTFRLMHADLTVQPHG-
General information:
TITO was launched using:
RESULT:
Template:
3LYD.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -48885 for 932 contacts (-52.5/contact) +
2D Compatibility (PS) -14357 + (NN) -1857 + (LL) 640
1D Compatibility (HY) -1600 + (ID) 900
Total energy: -66959.0 ( -71.84 by residue)
QMean score : 0.523
(partial model without unconserved sides chains):
PDB file :
Tito_3LYD.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3LYD-query.scw
PDB file :
Tito_Scwrl_3LYD.pdb
: