Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MLKKLSPIFSNITGVVRYQDLAYVASVSDEIQEQNIAHSYVTEWDCGTWCVAGEDDDMLPWEIVSATVVHEPVEQALFLGA-------RGQVFCMG-SGDIHEEQLPDGDDAI---GGRGNMRGVACI---DGVAYACGMDRQVYRRFD-ENDWRAIDTGARPPAGSEAVVGFEAIG--GFGAREIYAVG-WDGEIWQYD--GKRWQPRESPTNL---------------------ILTAICCAEDGSVYACGQA---------GTLLRGR--NDHWEIIAQDDV---------------DEDLWSLAWF-DGALYVSSA-----TAVYTLVG--GHLKEVDFGDEQPQRCFHLSAADGVLWSIAAKDIFSFDGQQWTRID |
| 3A0F Chain:A ((71-345)) | ---------------------------------------------------------------ESIALDPHNPDRLYLAQGDYVQWDPWAAFLVSDDRGKTFKQ-YRSPVPMGANDMGRNGGERLAVNPHWTDELWFGSRTQGLWRSTDRAQTWSRMNQLPDSS---TYGIGIISVIFDPKNVGTAYVASHAVGGLWVTWDGGANWSQVGGQPTQWSDWTKSIVAASGTAIQSSGPLPIKIALGKNGRLYITYSDAPGPWGVLYGEVWSYDPTNGNWKHITPSREGANTYPAPTGNKKVVPGGWNGISVGNGDTVVVSTLDANGEDSVYLSRDAGNSWKDLGKLTTPAGAGGNSQKESDAKLRNGTPLPWLSFQNRGSGIV |
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General information:
TITO was launched using:
| RESULT:
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Template: 3A0F.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -93878 for 1551 contacts (-60.5/contact) +
2D Compatibility (PS) -21829 + (NN) -8571 + (LL) 4676
1D Compatibility (HY) -4400 + (ID) 1300
Total energy: -125302.0 ( -80.79 by residue)
QMean score : 0.285
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