Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | -------MSGATRKPGFTVAVLATLLAAVVVLLGAYTRLTHAGLGCPDWPGCYGFVHVPLSEAQ---LAHAELHFPDAPVEAQKGWNEMIHRYFAGALGLLILG--------LALHALVRRGRDGQPLKLPLLLLAVVIAQAAFGMWTVTLKLWPQ--VVTAHLLG---GFTTLALL-------FLLALRLSGRFAARRYPAA---TRGLAGLALLLVIGQIALGGWVSSNYAAVACIDLPTCHGEWWPRMDFANGFHLTQHIGPNYLGGQLDSDARTAIHMTHR-----IGALCV--TLVLLLLAWRLQRSGLVWPTALMLLGLSLQIGLGISNVLLHLPLPVAVAHNGGGALLLLSLVLVNYRLRAPASVRAPAPSPQRVRRTLPPAQG-SRLKAA------------- |
| 2VDU Chain:B ((2-436)) | SVIHPLQNLLTSRDGSLVFAIIKN--CILSFKYQSPNHWEFAGKWSDDFPIYSYIRNLRLTSDESRLIACA-----------------------DSDKSLLVFDVDKTSKNVLKLRKRFCFSKRPNAISIAEDDTTVIIADKFGDVYSIDINSIPEEKFTQEPILGHVSMLTDVHLIKDSDGHQFIITSDRDEHIKISHYPQCFIVDKWLFGHKHF--VSSICCG----KDYLLLSAGGDDKIFAWDWKTGKNLSTFDYNSLIKP-YLNDQHLAIIEFAVSKIIKSKNLPFVAFFVEATKCIIILEMSEKQKGDLALKQIITFPYNV-ISLSAHNDEFQVTLDNKESSGVQKNF----AKFIEYNLNENSFVVNNEKSNEFDSAIIQSVQGDSNLVTKKEEIYPLYNVSSL |
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General information:
TITO was launched using:
| RESULT:
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Template: 2VDU.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -342051 for 2515 contacts (-136.0/contact) +
2D Compatibility (PS) -33055 + (NN) 8392 + (LL) 3064
1D Compatibility (HY) -18000 + (ID) 2700
Total energy: -384350.0 ( -152.82 by residue)
QMean score : 0.103
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