Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MDRLPIIDIAPLYGADRGAWNDVARRIDQACREWGFFYIAGHPLPAARFEALLAAAREF-FALPVEEKLKIDITRSRNHRGYGAIATEQLDPA--LPSDFKETFDMALHL----PAEHPDVRAGKSFYGPNRHPDL---PGWEALLEGHYADMLALARTVLRALAIALGIEEDFFDRRFE-----QPVSVFR---LIHYPPASARQSADQPGAGA--HTDYGCVTLLYQDAAGGLQVQNRQGEWIDAPPIDGTFVVNIGDMMARWSNDRYRSTPHRVISPRGVHRYSMPFFAEPHMDTEIRCLPGCFDADNPPKYPPTTCGDWLTSRFAQTYAYRRGETA |
1ODN Chain:A ((8-294)) | --NVPKIDVSPLFGDDQAAKMRVAQQIDAASRDTGFFYAVNHGINVQR---LSQKTKEFHMSITPEEKWDLAI------RAYNKEHQDQVRAGYYLSIPGKKAVESFCYLNPNFTPDHPRIQAKTPTHEVNVWPDETKHPGFQDFAEQYYWDVFGLSSALLKGYALALGKEENFFARHFKPDDTLASVVLIRYPYLDPYPEAAIKTAADGTKLSFEWHEDVSLITVLYQSNVQNLQVETAAG-YQDIEADDTGYLINCGSYMAHLTNNYYKAPIHRV-KWVNAERQSLPFFVNLGYDSVIDPFDPREPNGKSDREPLSYGDYLQNGLVS----------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 1ODN.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -151455 for 2017 contacts (-75.1/contact) +
2D Compatibility (PS) -29254 + (NN) -15629 + (LL) 1128
1D Compatibility (HY) -18800 + (ID) 4600
Total energy: -218610.0 ( -108.38 by residue)
QMean score : 0.494
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