Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MPADGEAARRADLLKAFLAQRQRMESLVSRWVGCRATAADLVQELFLRFWRRPAAPVEELGSYLLRSARNLAIDHLRGEGSRQRQLDDWLPEQRQGEPVGPEQALEAGDQWRRVEAALRGLPERTRRIFLLNRIHGRTYAEIAQAMQLSQSAVEKHMMRALDACKASLAGPAGEQARSAQP
1SC5 Chain:A ((177-233))
----------------------------------------------------------------------------------------------------------------KVKEAVSKLPEREKLVIQLIFYEELPAKEVAKILETSVSRVSQLKAKALERLREMLS------------
General information:
TITO was launched using:
RESULT:
Template:
1SC5.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -27958 for 375 contacts (-74.6/contact) +
2D Compatibility (PS) -6307 + (NN) -2555 + (LL) 8684
1D Compatibility (HY) -3200 + (ID) 750
Total energy: -32086.0 ( -85.56 by residue)
QMean score : 0.702
(partial model without unconserved sides chains):
PDB file :
Tito_1SC5.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1SC5-query.scw
PDB file :
Tito_Scwrl_1SC5.pdb
: