Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MSHPSHVRALCASLCLGAGLPVHAGHVHAGQGFLEDAKASLTARNFHLHRNF-VGDASQGKAEEWTQSFILDARSGFTQGSVGFGLDVLGLYSLKLDGGKGTAGTQLLPIHDDGRPADDFGRLAVAGKLRVSNSELKIGEWMPVLPILRSDDGRSLPQTFRGGQLSANEIAGLTLYAGQFRGNSPRNDASMQDMSLFGRPAA-TSDRFDFAGGEYRFNGERSLLGLWNAELKDIYRQQYLQLQHSQPLGDWL-LGANLGGFRGRDAGSARAGKLDNRTVSALFSARYGLHTLYLGLQKVSGDDGWMRVNGTSGGTLANDSYNASYDNPGERSWQLRYDFDFVGLGLPGLTFMTRYLHGDHV-RLAGVTDDGSEWGRESELGYTLQSGAFKRLNVRWRNSSQRRDWGSNTRFDENRLIVSYPLSLL |
2Y0H Chain:A ((3-390)) | ---------------------------------LADSSAHLDLRNFYQLRDYRQ-----SQAGNWSQGFVLRLQSGFTGGPLGFGLDATGLLGVKL-------------------PVDDYSHLGLTAKLRYSQTQLQVGILMPQLPVAFRDDVRLLPQTFDGALLTSSEIEGLTLTAGQLWKSRTRE---SDDMYIMGRDKAHASDEFNLAGATYAFTPRLSA-SYYYGQLKDIYRQHYLGLLHTLPLGEGLSLRSDLRYFDSGEDGAAISGPVDNRNLNAMLTLRAGAHAFGIGVQKMIGNDAFPVLNGYTTPYVANLMAYQTFTRPQEKSWQLRYDYDFAGLGLPGLNLMTRYVQGRDIDRGAGRADD-SEWERNTDLSYVIQSGPLKSVALKWRNITYRSRYGAD--LDENRFIVNYTLKLW |
|
General information:
TITO was launched using:
| RESULT:
|
Template: 2Y0H.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
|
3D Compatibility (PKB) 15798 for 2776 contacts (5.7/contact) +
2D Compatibility (PS) -35650 + (NN) 534 + (LL) 1756
1D Compatibility (HY) -30800 + (ID) 8150
Total energy: -56512.0 ( -20.36 by residue)
QMean score : 0.127
|
|
|