Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSDPKTLTPEQRIKELEQQLELMSQKDQFFETVVDVLKNDYGVSVVKKRSGKSSRKVKSQD
4JFW Chain:A ((407-427))
-------------------------------TVVETTRNEYNVSVPKKNPGEPYVIQLKVR
General information:
TITO was launched using:
RESULT:
Template:
4JFW.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -869 for 65 contacts (-13.4/contact) +
2D Compatibility (PS) -2054 + (NN) 1999 + (LL) 2616
1D Compatibility (HY) -800 + (ID) 550
Total energy: 342.0 ( 5.26 by residue)
QMean score : 0.360
(partial model without unconserved sides chains):
PDB file :
Tito_4JFW.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4JFW-query.scw
PDB file :
Tito_Scwrl_4JFW.pdb
: