Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MNRVLYPGTFDPITKGHGDLIERASRLFDHVIIAVAASPKKNPLFSLEQRVALAQEVTKHLPNVEVVGFSTLLAHFVKEQKANVFLRGLRAVSDFEYEFQLANMNRQLAPDVESMFLTPSEKYSFISSTLVREIAALGGDISKFVHPAVADALAERFKR
3F3M Chain:A ((9-160))
------PGSFDPITYGHLDIIERSTDRFDEIHVCVLK-----GTFSLEERMDLIEQSVKHLPNVKVHQFSGLLVDYCEQVGAKTIIRGLRAVSDFEYELRLTSMNKKLNNEIETLYMMSSTNYSFISSSIVKEVAAYRADISEFVPPYVEKALKKKFK-
General information:
TITO was launched using:
RESULT:
Template:
3F3M.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -97803 for 1094 contacts (-89.4/contact) +
2D Compatibility (PS) -16062 + (NN) -7802 + (LL) 668
1D Compatibility (HY) -16400 + (ID) 3650
Total energy: -141049.0 ( -128.93 by residue)
QMean score : 0.575
(partial model without unconserved sides chains):
PDB file :
Tito_3F3M.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3F3M-query.scw
PDB file :
Tito_Scwrl_3F3M.pdb
: