Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MSFFHGVTVTNVDIGARTIALPASSVIGLCDVFTPGAQASAKPNVPVLLTSKKDAAAAFGIGSSIYLACEAIYNRAQAVIVAVGVETAETPEAQASAVIGGISAAGERTGLQALLDGKSRFNAQPRLLVAPGHSAQQAVATAMDGLAEKLRAIAILDGPNSTDEAAVAYAKNFGSKRLFMVDPGVQVWDSAT-----------------------NAARNAPASAYAAGLFAWTDAEYGFWSSPSNKEIKG-VTGTS-------------RPVEFLDGDETCRANLLNNANIATIIRD---DGYRLWGNRTLSSDSKW------------AFVTRVRTMDLVMDAILAGHKWAVDRGITKTYVKDVTEGLRAFMRDLKNQGAV-----------INFEVYADPDLNSASQLAQGKVYWNIRFTDVPPAENPNFRVEVTDQWLTEVLDVA |
3J9O Chain:B ((236-497)) | --------------------------------------------------------------------------------------------------------------------------------------------------------------------------NLDVAAYIGLTVGDFMLRQPYNPENNPVQYKLMEGFNEFVDYDKNESYLWGPASIHLVKNMMRSYDKTRWFQYIRGVESGGYVKNLVACVYDNKGILETKSPLNVLFAD--YMELSLANIGLIPFVSEKGTSNACFFSVNSAKKVEEFVDGFDSANSRLIANLSYTMCISRISHYIKCVIRDKIGS---IVDVESIQKILSDWISEFVTTVYQPTPLEMARYPFRNVSIEVKTIP-----GKPGWYSCKINVIPHIQFEGMNTTMTIDTRLEPELFGTN |
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General information:
TITO was launched using:
| RESULT:
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Template: 3J9O.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -28504 for 1256 contacts (-22.7/contact) +
2D Compatibility (PS) -20473 + (NN) -3409 + (LL) 12412
1D Compatibility (HY) -4400 + (ID) 1000
Total energy: -45374.0 ( -36.13 by residue)
QMean score : 0.252
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