Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKSKISEYTEKEFLEFVKDIYTNNKKKFPTEESHIQAVLE-FKKLTEHPSGSDLLYYPNENREDSPAGVVKEVKEWRASKGLPGFKAG
1AYI Chain:A ((3-86))
LKNSISDYTEAEFVQLLKEI---EKENVAATDDVLDVLLEHFVKITEHPDGTDLIYYPSDNRDDSPEGIVKEIKEWRAANGKPGFKQ-
General information:
TITO was launched using:
RESULT:
Template:
1AYI.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -3790 for 521 contacts (-7.3/contact) +
2D Compatibility (PS) -9025 + (NN) -8988 + (LL) -108
1D Compatibility (HY) -8800 + (ID) 2200
Total energy: -32911.0 ( -63.17 by residue)
QMean score : 0.614
(partial model without unconserved sides chains):
PDB file :
Tito_1AYI.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1AYI-query.scw
PDB file :
Tito_Scwrl_1AYI.pdb
: