Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MLQVSVYRYNPDKDA-APYMQDFQVDTNGKDVMVLDVLALIK-EQDEGFSYRRSCREGVCGSDGMNINGKNGLACITPLSAAGLKGGKLVIRPLPGLPVIRDLVVDMSIFYKQYEKVKPFLQ--NDTPAPAIERLQTPEEREKLDGLYECILCACCSTSCPSFWWNPDKFLGPAALLQAYRFLADSRDTKTEERLASLDDPFSVFRCRGIMNCVNVCPKGLNPTKAIGHVRNMLLQSGT
4YTP Chain:B ((41-270))
--KFAIYRWDPDKTGDKPHMQTYEIDLNNCGPMVLDALIKIKNEIDSTLTFRRSCREGICGSCAMNINGGNTLACTRRIDTNLDKVSK--IYPLPHMYVIKDLVPDLSNFYAQYKSIEPYLKKKDESQEGKQQYLQSIEEREKLDGLYECILCACCSTSCPSYWWNGDKYLGPAVLMQAYRWMIDSRDDFTEERLAKLQDPFSLYRCHTIMNCTGTCPKGLNPGKAIAEIKKMMATYKE
General information:
TITO was launched using:
RESULT:
Template:
4YTP.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -121700 for 1732 contacts (-70.3/contact) +
2D Compatibility (PS) -24176 + (NN) -14078 + (LL) 752
1D Compatibility (HY) -24400 + (ID) 6450
Total energy: -190052.0 ( -109.73 by residue)
QMean score : 0.476
(partial model without unconserved sides chains):
PDB file :
Tito_4YTP.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4YTP-query.scw
PDB file :
Tito_Scwrl_4YTP.pdb
: