Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSGIPEITAYPLPTAQQLPANLARWSLEPRRAVLLVHDMQRYFL----RPLPESLRAGLVANAARLRRWCVEQGVQIAYTAQPGSMTEEQRGLLKDFWGPGMRASPADREVVEELAPGPDDWLLT-------KWRYSAFFHSDLLQRMRAAGRDQLVLCGVYAHVGVLISTVDAYSNDIQPFLVADAIADFSEAHHRMALEYAASRCAMVVTTDEVLE
1IM5 Chain:A ((6-178))
---------------------------------LIVVDMQRDFMPGGALPVPEGDK--IIPKVNEYIRKFKEKGALIVATR---DWHPENHISFRERGGPWPRHCVQNTPGAEFVVDLPEDAVIISKATEPDKEAYSGFEGTDLAKILRGNGVKRVYICGVATEYCVRATALDALKHGFEVYLLRDAVKGIKPEDEERALEEMKSRGIKIVQF-----
General information:
TITO was launched using:
RESULT:
Template:
1IM5.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -131047 for 1295 contacts (-101.2/contact) +
2D Compatibility (PS) -16898 + (NN) -4290 + (LL) 2428
1D Compatibility (HY) -6400 + (ID) 2250
Total energy: -158457.0 ( -122.36 by residue)
QMean score : 0.426
(partial model without unconserved sides chains):
PDB file :
Tito_1IM5.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1IM5-query.scw
PDB file :
Tito_Scwrl_1IM5.pdb
: