Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKNAMALTLAGLLAAPSLGFAAAPDAVMVFARQGDKGSVSVGDKHFRTQAFKVRLVNAAKSEISLKNSCLVAQSAAGQSFRLDT--V-DEELTADTLKPGASVEGDAIFASEDDAVYGASLVRLSDRCK
1XQ4 Chain:A ((7-84))
--------------------PVKPYDLTVSVTPRYVPEQSDPSQQQYVFAYTVRITNTGSHPAQVISRHWIITDGEERVQEVRGLGVVGQQ---PLLAPGETFEYTSGCPLPTPIGTMRGTYHCVGENG
General information:
TITO was launched using:
RESULT:
Template:
1XQ4.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -4773 for 352 contacts (-13.6/contact) +
2D Compatibility (PS) -7846 + (NN) -59 + (LL) 2044
1D Compatibility (HY) -800 + (ID) 550
Total energy: -11984.0 ( -34.05 by residue)
QMean score : 0.388
(partial model without unconserved sides chains):
PDB file :
Tito_1XQ4.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1XQ4-query.scw
PDB file :
Tito_Scwrl_1XQ4.pdb
: