Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MAEINIYQNPGQSLANIYKGFARQCNPGFVFPEAQTIEAWDIPLRLHPEFIPGGDISKADQQYSTLLAQEIANGVTIGFRMVNEKERVCNVEILPLLTSMAQNLDRIKARFGSGYLDRFKGSPNVYPTDVGFSTDASGGISQESGLLVSYGVNLRTLTPGTWQAMTLPEDIKALVG--PGVGLRLDAPNFSDVFNTIKSGLRYTTAVTLLLAYFAAI |
3VA8 Chain:A ((174-253)) | ---------------------------------------------------------------------------------------------------------------------KWGGHPGDEDDEYGPALDPEGVVKQAKKIIDEYGFKAIKLKGGVFPPADEVAAIKALHKAFPGVPLRLD-PNAAWTVETSKWVAKELEGIVEYLEDPAGE |
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General information:
TITO was launched using:
| RESULT:
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Template: 3VA8.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -3436 for 437 contacts (-7.9/contact) +
2D Compatibility (PS) -8293 + (NN) -4187 + (LL) 7812
1D Compatibility (HY) -1600 + (ID) 1250
Total energy: -10954.0 ( -25.07 by residue)
QMean score : 0.147
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