Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MKKKSLLPLGLAIGLASLAASPLIQASTYTQTKYPIVLAHGMLGFDNILGV-DYWFGIPSALRRDGAQVYVTEVSQL---DTSEVRGEQLLQQVEEIVALSGQPKVNLIGHSHGGPTIRYVAAVRPDLIASATSVGAPHKGSDTADFLRQI---PPGSAGEAVLSGLVNSLGALISFLSSGSTGTQNSLGSLESLNSEGAARFNAKYPQ---GIPTSACGEGA--YKVNGVSY--YSWSGSS-------------------PLT---NFLDPSD-AFLGASSLTFKNGTA-NDGLVGTCSSHLGMVIRDNYRMNHLDEVNQVFGLTSLFETSPVSVYRQHANRLKNASL |
| 2LIP Chain:A ((1-316)) | -------------------------ADNYAATRYPIILVHGLTGTDKYAGVLEYWYGIQEDLQQRGATVYVANLSGFQSDDGPNGRGEQLLAYVKTVLAATGATKVNLVGHSQGGLTSRYVAAVAPDLVASVTTIGTPHRGSEFADFVQGVLAYDPTGLSSTVIAAFVNVFGILTS--SSNNT-NQDALAALKTLTTAQAATYNQNYPSAGLGAPGS-CQTGAPTETVGGNTHLLYSWAGTAIQPTISVFGVTGATDTSTIPLVDPANALDPSTLALFGTGTVMVNRGSGQNDGVVSKCSALYGQVLSTSYKWNHLDEINQLLGVRGANAEDPVAVIRTHANRLK---- |
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General information:
TITO was launched using:
| RESULT:
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Template: 2LIP.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -38700 for 2345 contacts (-16.5/contact) +
2D Compatibility (PS) -29926 + (NN) -7291 + (LL) 2520
1D Compatibility (HY) -23200 + (ID) 6550
Total energy: -103147.0 ( -43.99 by residue)
QMean score : 0.418
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