Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MTGLFVTLEGPEGAGKSTNRDYLAERLRERGIE-VQLTREPGGTPLAERIRELLLAPS-DEPMAADTELLLMFAARAQHLAGVIRPALARGAVVLCDRFTDATYAYQGGGRGLPEARIAALESFVQGDLRPDLTLVFDLPVEIGLARAAARGRLDRFEQEDRRFFEAVRQTYLQRAAQAPERYQVLDAGLPLAEVQAGLDRLLPNLLERLNG
3LV8 Chain:A ((26-234))
-NAKFIVIEGLEGAGKSTAIQVVVETLQQNGIDHITRTREPGGTLLAEKLRALVKEEHPGEELQDITELLLVYAARVQLVENVIKPALARGEWVVGDRHDMSSQAYQGGGRQIAPSTMQSLKQTALGDFKPDLTLYLDIDPKLGLER-----ELDRIEKMDISFFERARERYLE-LANSDDSVVMIDAAQSIEQVTADIRRALQDWLSQVN-
General information:
TITO was launched using:
RESULT:
Template:
3LV8.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -78364 for 1602 contacts (-48.9/contact) +
2D Compatibility (PS) -23325 + (NN) -19627 + (LL) 496
1D Compatibility (HY) -16400 + (ID) 4300
Total energy: -141520.0 ( -88.34 by residue)
QMean score : 0.506
(partial model without unconserved sides chains):
PDB file :
Tito_3LV8.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3LV8-query.scw
PDB file :
Tito_Scwrl_3LV8.pdb
: