Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSLIDPRAIIDPSARLAADVQVGPWSIVGAEVEIGEGTVIGPHVVLKGPTKIGKHNRIYQFSSVGEDTPDLKYKGEPTRLVIGDHNVIREGVTIHRGTVQDRAETTIGDHNLIMAYAHIGHDSVIGNHCILVNNTALAGHVHVDDWAILSGYTLVHQYCRIGAHSFSGMGSAIGKDVPAYVTVFGNPAEARSMNFEGMRRRGFSSEAIHALRRAYKVVYRQGHTVEEALAEL-AESAAQFPEVAVFRDSIQSATRGITR
4E6U Chain:A ((9-265))
--LIHSTAIIDPSAVIASDVQIGPYCIIGPQVTIGAGTKLHSHVVVGGFTRIGQNNEIFQFASVGEVCQDLKYKGEETWLEIGNNNLIREHCSLHRGTVQDNALTKIGSHNLLMVNTHIAHDCIVGDHNIFANNVGVAGHVHIGDHVIVGGNSGIHQFCKIDSYSMIGGASLILKDVPAYVMASGNPAHAFGINIEGMRRKGWSKNTIQGLREAYKLIFKSGLTSVQAIDQIKSEILPSVPEAQLLIDSLEQSERGIVR
General information:
TITO was launched using:
RESULT:
Template:
4E6U.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -186008 for 2268 contacts (-82.0/contact) +
2D Compatibility (PS) -27591 + (NN) -10354 + (LL) 180
1D Compatibility (HY) -22800 + (ID) 6500
Total energy: -253073.0 ( -111.58 by residue)
QMean score : 0.537
(partial model without unconserved sides chains):
PDB file :
Tito_4E6U.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4E6U-query.scw
PDB file :
Tito_Scwrl_4E6U.pdb
: