Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MNDRLQIEDLLLGDGKEVVK-GALITTQYKGTLEDGTLFDSSYERGRPFQCVIGTGRVIKGWDQGLMGMKVGGKRRLFVPSHLAYGERQVGAHIKPHSNLLFEIELLEVLTRDD
1YAT Chain:A ((7-112))
---NVKIDRISPGDGATFPKTGDLVTIHYTGTLENGQKFDSSVDRGSPFQCNIGVGQVIKGWDVGIPKLSVGEKARLTIPGPYAYGPRGFPGLIPPNSTLVFDVELLKV-----
General information:
TITO was launched using:
RESULT:
Template:
1YAT.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -53685 for 773 contacts (-69.5/contact) +
2D Compatibility (PS) -11026 + (NN) 3044 + (LL) 228
1D Compatibility (HY) -10000 + (ID) 2650
Total energy: -74089.0 ( -95.85 by residue)
QMean score : 0.565
(partial model without unconserved sides chains):
PDB file :
Tito_1YAT.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1YAT-query.scw
PDB file :
Tito_Scwrl_1YAT.pdb
: