Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MGKRIGLFGGTFDPVHIGHMRSAVEMAEQFALDELRLLPNARPPHRETPQVSAAQ-RLAMVERAVAGVERLTVDPRELQRDKPSYTIDTLESVRAELAADDQLFMLIGWDAFCGLPTWHRWEALLDHCHIVVLQRPDADSEPPESLRDLLAARSVADPQALKGPGGQITFVWQTPLAVSATQIRALLGAGRSVRFLVPDAVLNYIEAHHLYRAPH
3HFJ Chain:A ((4-191))
--RKIGIIGGTFDPPHYGHLLIANEVYHALNLEEVWFLPNQIPPHKQGRNITSVESRLQMLELATEAEEHFSICLEELSRKGPSYTYDTMLQLTKKY-PDVQFHFIIGGDMVEYLPKWYNIEALLDLVTFVGVARPGY------KLRTPYPITTVEIPE----------------FAVSSSLLRERYKEKKTCKYLLPEKVQVYIERNGLYES--
General information:
TITO was launched using:
RESULT:
Template:
3HFJ.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -146317 for 1426 contacts (-102.6/contact) +
2D Compatibility (PS) -19781 + (NN) -7140 + (LL) 524
1D Compatibility (HY) -17200 + (ID) 3400
Total energy: -193314.0 ( -135.56 by residue)
QMean score : 0.454
(partial model without unconserved sides chains):
PDB file :
Tito_3HFJ.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3HFJ-query.scw
PDB file :
Tito_Scwrl_3HFJ.pdb
: