Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MTRGRKILTWSLASLVLLLAALVVFIATFDWNLIKPTL--NEKVSAALNRPFAINGNLAVAWRREEGEEGWRAWIPWPRFSAEDITLGNPEWTAGKTKASEFASLERIEFRLAPLPLLWQTIRIPQIKLTQPR----AELLRLADGRANWDFDLPASDSDEPSAWQLDIREIGFDKGSVSLDDQRLKTRLEVLVDPLGKPVPFGQLAGKALATGDAANAQDYVFGWKVKGTYKGQALAGSGKVGGMLALQDASKPFPLQAEVS--AGSTRAAVVGTLTDPLNLGALDLRLKLSGTSMANLYPLTGITLPDTPAYSTDGHLLARLKEEGGALFRYENFNGKVGASDLHGSLTFVARQPRPKLSGKLTSEQLRFADLGPLIGADSNAEKQKRGQTSRQPGDKVLPVEEFRTERWRDMDADVEFTGKRIVHSDQLPISDLYTHLVLNDGL--LRLEP-LRFGVAGGKLESDIRLDGGKQPMQSRVKMSARGFKLKQLFPGFAPMQTSFGELNGDASLSGSGNSVAKILGGADGELKMLINDGAISKGLTEIAGLNVGNYLVTKLFGDDEVKINCAAADFGLQKGLMTSRLFVFDTENALVNVDGTVNFANEKLDLDVTPHSKGLRIFSLRSPLYVRGTFAKPDAGVHAGPLVARGAGMIALGVTVGPAASLLALVAPSKSDDNQCTALLQRMRLPAKVPAGKR---- |
| 1JJU Chain:A ((1-489)) | -VTGEEVLQNA-------CAACHVQHEDGRWERIDAARKTPEGWDMTVTRMMRNHG---VALEPEERAAIVRHLSDTRGLSLAET--------------------EERRYILEREPVAWDEGPDTSMTQTCGRCHSYARVALQRRTPEDWKHLVNFHLGQFPTLEY----------QALARDRDWWGIAQAEIIPFLARTYPLGE---APDAYADDASGAYVLAGRQ----------PGRGDYTGRLVLKKAGEDYEVTMTLDFADGSRSFSGTGRILGA---GEWRATLSDGTVTIRQIFALQDGRFS--------GRWHDADSDVIG---------GRLAAVKADAAPQVLAVAPARLKIGEETQLRVAGTGLGSDLTLPEGVAG--------------------SVESAGNGVTVLKLTATGTPGPVSLELGGQKVDLVAYDRPDRISIVPDLTIARIGG---------NGGPIPKVPAQFEAMGWL-----------------------------------NGPDGQPG-----------------------------TGDDIALGAFPASWATDN------------FDEEAEKMQDAKYAG---------------------SIDDTGLFTPAEAGPNP----ERPMQ--------TNNAGNLKVIATVDAEGEP---LSAEAHLYATVQRFVDAPIR |
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General information:
TITO was launched using:
| RESULT:
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Template: 1JJU.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -30980 for 3743 contacts (-8.3/contact) +
2D Compatibility (PS) -48609 + (NN) 4646 + (LL) 13020
1D Compatibility (HY) -4800 + (ID) 4300
Total energy: -71023.0 ( -18.97 by residue)
QMean score : 0.143
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