Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MVNLILVGPMGAGKSTIGRLLAKELHLAFKDSDKEIEQRCGANIPWIFDVEGEVGFREREQAMLTELCAADGMVIATGGGAVMRDGNRQVLRAGGRVVYLHASVEHQIARTARDRNRPLLQKPNPGQILRDLMALRDPLYREIADVVVETDERPPRLVVQEILERLRKLPPR
2IYY Chain:A ((6-170))
----VLVGLPGSGKSTIGRRLAKALGVGLLDTDVAIEQRTGRSIADIFATDGEQEFRRIEEDVVRAALADHDGVLSLGGGAVTSPGVRAAL-AGHTVVYLEISAAEGVRRTGGNTVRPLLAGPDRAEKYRALMAKRAPLYRRVATMRVDTNRRNPGAVVRHILSRLQVPS--
General information:
TITO was launched using:
RESULT:
Template:
2IYY.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -80243 for 1284 contacts (-62.5/contact) +
2D Compatibility (PS) -18461 + (NN) -10465 + (LL) 556
1D Compatibility (HY) -9600 + (ID) 3700
Total energy: -121913.0 ( -94.95 by residue)
QMean score : 0.556
(partial model without unconserved sides chains):
PDB file :
Tito_2IYY.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2IYY-query.scw
PDB file :
Tito_Scwrl_2IYY.pdb
: