Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MATPAYMSITGTKQGLITAGAFTEDSVGNTYQEGHEDQVMVQGFNHEVIIPRDPQSGQPTGQRVHKPVVITKVFDKASPLLLAALTSGERLTKVEIQWYRTSAAGTQEHYYTTVLEDAIIVDIKDYMHNCQDPGNAHFTHLEDVHFTYRKITWTHEVSGTSGSDDWRSPVAG
4HKH Chain:E ((2-157))
-AIPVYLWLKDD------GGADIKGSVDVQDREG---SIEVVAQEHCLYIP--------TGTRIHTPFLFTKEIDSSSPYLYKAVTTGQTLKSAEFKWYKI----QEVEYFNTKLENVKVVKVNPVMHD---------NHLEQVELRYEKITWTYKDGNIIHSDAW------
General information:
TITO was launched using:
RESULT:
Template:
4HKH.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -52269 for 955 contacts (-54.7/contact) +
2D Compatibility (PS) -14813 + (NN) -4102 + (LL) 720
1D Compatibility (HY) -11200 + (ID) 2550
Total energy: -84214.0 ( -88.18 by residue)
QMean score : 0.408
(partial model without unconserved sides chains):
PDB file :
Tito_4HKH.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4HKH-query.scw
PDB file :
Tito_Scwrl_4HKH.pdb
: