Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSALVGVIMGSKSDWSTLSHTADMLDKLGIPYEVKVVSAHRTPDLLFQYAEEAEGRGLEVIIAGAGGAAHLPGMCAAKTHLPVLGVPVQSSMLSGVDSLLSIVQMPAGVPVATLAIGKAGAVNAALLSASILGAKHPQYHEALKQFRANQTETVLDNPDPRDA
2NSL Chain:A ((8-168))
--ARVAIVMGSKSDWATMQFAAEIFEILNVPHHVEVVSANRTPDKLFSFAESAEENGYQVIIAGAGGAAHLPGMIAAKTLVPVLGVPVQSAALSGVDSLYSIVQMPRGIPVGTLAIGKAGAANAALLAAQILATHDKELHQRLNDWRKAQTDEVLENPDPRGA
General information:
TITO was launched using:
RESULT:
Template:
2NSL.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -124969 for 1307 contacts (-95.6/contact) +
2D Compatibility (PS) -17501 + (NN) -7651 + (LL) 180
1D Compatibility (HY) -17200 + (ID) 5150
Total energy: -172291.0 ( -131.82 by residue)
QMean score : 0.636
(partial model without unconserved sides chains):
PDB file :
Tito_2NSL.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2NSL-query.scw
PDB file :
Tito_Scwrl_2NSL.pdb
: