Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MDNALVRLTQVGVSFNGQAVLSDVDLAIEPGQIVTLIGPNGAGKTTLVRSVLGLLKPHVGEVWRRPRLT--------------IGYMPQKLHV--------DATLPLSVLRFLRLVPGVKREQALAALREVGAA----HVLERPLQSISGGELQRVLLARALLRKPELLVLDEPVQGVDVAGQAELYRLIGKLRDRYGCGVLMVSHDLHLVMSATDQV-VCLNRHVCCSGHPEQVSGDPAFVELFGQDARSLAIYHHHHDHAHDLHGEVVKAGPGALPPGTRFTPVHKHGPDCNHG
1OXU Chain:A ((21-237))
--------------------LDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGELYFDDRLVASNGKLIVPPEDRKIGMVFQTWALYPNLTAFENIAFPLTNMK-------MSKEEIRKRVEEVAKILDIHHVLNHFPRELSGGQQQRVALARALVKDPSLLLLDEPFSNLDARMRDSARALVKEVQSRLGVTLLVVSHDPADIFAIADRVGVLVKGKLVQVGKPEDLYDNPVSIQV----------------------------------------------------
General information:
TITO was launched using:
RESULT:
Template:
1OXU.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -141628 for 1377 contacts (-102.9/contact) +
2D Compatibility (PS) -20924 + (NN) -10529 + (LL) 3216
1D Compatibility (HY) -16800 + (ID) 3300
Total energy: -189965.0 ( -137.96 by residue)
QMean score : 0.570
(partial model without unconserved sides chains):
PDB file :
Tito_1OXU.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1OXU-query.scw
PDB file :
Tito_Scwrl_1OXU.pdb
: