Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | --MKVAISGAGVAGAALAHWLQRTGHTPTVIERAPKFRTGG------YMIDFWGVGYQVAKRMGITDQIAAAGYHMEHVRSVGPTGKVKADLGVDVFRRMVGDD----FTSLPRGDLAAAIYTTIEDQVETIF-DDSIATIDEHRDGVRLTFE--RTAPRDFDLVIGADGLHSNVRRLVFGP----ERDFEHYLGCKVAACVVDGYRPRDERSYVLYNTVDRQLARFALRGDRTMFLFVFRAEHDNPGVAPKDELRDQFGDVGWESRDILAA--------LDDVEDLYF----DVVSQIRMDRWSRG-RVLLIGDAAGCISLLGGEGTGLAITEAYVLAGELARAGGDHRRAFDAYEKRLRPFIEGKQASAAKFIWFFATRTRFGLWFRNVAMRTM-------NFGPLATLFAGS--------VRDDFELPDYTW------------------------------ |
| 5FN0 Chain:A ((6-460)) | NARQVTIIGAGLAGTLVARLLARNGWQVNLFERRPDPRIETGARGRSINLALAERGAHALRLAGLEREVLAEAVMMR--------GRMVHVPGTPPNLQPYGRDDSEVIWSINRDRLNRILLDGAEAAGASIHFNLGLDSVDFARQRLTLSNVSGERLEKRFHLLIGADGCNSAVRQAMASVVDLGEHLETQPHGYKELQITPEASAQFNLEPNALHIWPHGDYMCIALPNLDRSFTVTLFLHHQSPAAQPASPSFAQLVD-GHAARRFFQRQFPDLSPMLDSLEQDFEHHPTGKLATLRLTTWHVGGQAVLLGDAAHPMVPFHGQGMNCALEDAVALAEHLQSAA-DNASALAAFTAQRQPDALAIQAMALENYVEMSSKVASPTYLLERELGQIMAQRQPTRFIPRYSMVTFSRLPYAQAMARGQIQEQLLKFAVANHSDLTSINLDAVEHEVTRCLPPLSHL |
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General information:
TITO was launched using:
| RESULT:
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Template: 5FN0.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -190234 for 3106 contacts (-61.2/contact) +
2D Compatibility (PS) -40426 + (NN) -9891 + (LL) 260
1D Compatibility (HY) -9600 + (ID) 4250
Total energy: -254141.0 ( -81.82 by residue)
QMean score : 0.383
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