Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHH--CPKTPFLLVGTQIDLRDDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAILAALEPPEPKKSRRCVLL
1U8Z Chain:A ((2-166))
LALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQIDILDTAG---YAAIRDNYFRSGEGFLCVFSITEMESFAATA-DFREQILRVKEDENVPFLLVGNKSDLEDK------------RQVSVEEAKNRADQWN-VNYVETSAKTRANVDKVFFDLMREIR--------------
General information:
TITO was launched using:
RESULT:
Template:
1U8Z.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -139310 for 1277 contacts (-109.1/contact) +
2D Compatibility (PS) -17007 + (NN) -4102 + (LL) 1828
1D Compatibility (HY) -10400 + (ID) 2550
Total energy: -171541.0 ( -134.33 by residue)
QMean score : 0.606
(partial model without unconserved sides chains):
PDB file :
Tito_1U8Z.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1U8Z-query.scw
PDB file :
Tito_Scwrl_1U8Z.pdb
: