Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | -----MPGPAAGSRARVYAEVNSLRSREYWDYEAHVPSWGNQDDYQLVRKLGRGKYSEVFEAINI-TNNERVVVKILK---PVKKKKIKREVKILENLRGGTNIIKLIDTVKDPVSKTP----ALVFEYINNTDFKQLYQILTDFDIRFYMYELLKALDYCHSK-GIMHRDVKPHNVMIDHQQKK----LRLIDWGLAEFYHPAQ-----EYNVRVASRYFKGPELLV---DYQMYDYSLDMWSLGCMLASMIF-RREPFFHGQDNYDQLVRIAKVLGTEELYGYLKKYHIDLDPHFNDILGQHSRKRWENFI--HSENRHLVSPEALDLLDKLLRYDHQQRLTAKEAMEHPYFYPVVKEQSQPCADNAVLSSGLTAAR- |
| 1LR4 Chain:A ((2-328)) | SKARVYADVNVLRP----KEYWDYEALTVQWG------E--QDDYEVVRKVGRGKYSEVFEGINVNNN-EKCIIKILKPVK---KKKIKREIKILQNLCGGPNIVKLLDIVRDQ----HSKTPSLIFEYVNNTDFKVLYPTLTDYDIRYYIYELLKALDYCHS-QGIMHRDVKPHNVMIDH----ELRKLRLIDWGLAEFY-HPGKEYNV----RVASRYFKGPELLVDLQDY---DYSLDMWSLGCMFAGMIFR-KEPFFYGHDNHDQLVKIAKVLGTDGLNVYLNKYRIELDPQLEALVGRHSRKPWLKFMNA--DNQHLVSPEAIDFLDKLLRYDHQERLTALEAMTHPYFQQVRAAEN-----------------S |
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General information:
TITO was launched using:
| RESULT:
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Template: 1LR4.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -198053 for 2301 contacts (-86.1/contact) +
2D Compatibility (PS) -31248 + (NN) -8860 + (LL) 3152
1D Compatibility (HY) -41200 + (ID) 10150
Total energy: -286359.0 ( -124.45 by residue)
QMean score : 0.742
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