Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MGNAATAKKGSEVESVKEFLAKAKEDFLKKWENPTQNNAGLEDFERKKTLGTG-SFGRVMLVKHKAT-EQYYAMKILDKQKVVKL-KQIEHTLNEKRILQ--AVNFPFLVRLEYAFKDNS-NLYMVMEYVPGGEMFSHLRRI-GRFSEPHARFYAAQIVLTFEYLHSLDLIYRDLKPENLLIDHQ-GYIQVTDFGFAKRV----KGRTWTLCGTPEYLAPEIILSK---GYNKAVDWWALGVLIYEMAAGY-PPFFADQP--IQIYEKIVSG------KVRFPSHFSSDLKDLLRNLLQVDLTKRFGNLKNGVSDIKTHKWFATTD---WIAIYQRKVEAPFIPKFRGSGDTSNFDDYEEEDIR---VSITEKCAKEFGEF |
| 1CDK Chain:A ((8-350)) | KGSEQESVKEFLAKAKEDFLKKWENPAQNTA------H--LDQFERIKTLGT-GSFGRVMLVKHKETG-NHFAMKILDKQKVVK-LKQIEHTLNEKRILQAV--NFPFLVKLEYSFKDN-SNLYMVMEYVPGGEMFSHLRR-IGRFSEPHARFYAAQIVLTFEYLHSLDLIYRDLKPENLLIDQ-QGYIQVTDFGFAKRVKGRT----WTLCGTPEYLAPEIILS-KGY--NKAVDWWALGVLIYEMAAG-YPPFFAD--QPIQIYEKIVSGKVRFPS------HFSSDLKDLLRNLLQVDLTKRFGNLKDGVNDIKNHKWFA---TTDWIAIYQRKVEAPFIPKFKGPGDTSNFDDYEEEEIRVSI---NEKCGKEFSEF |
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General information:
TITO was launched using:
| RESULT:
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Template: 1CDK.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -151269 for 2470 contacts (-61.2/contact) +
2D Compatibility (PS) -33415 + (NN) -14413 + (LL) 1504
1D Compatibility (HY) -42000 + (ID) 13350
Total energy: -252943.0 ( -102.41 by residue)
QMean score : 0.704
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