Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
---------------------MRKEIRNLKIASVLRRAISKVLMEGKVFNKNVVISDVKLSGDLKKADVYIVLSSLSKKKYNINTVVDEINQ--------SAWLIRKSILS--YVDLRFIPKLVFKADLAFDNFVNISKILSNYT-----
6PAX Chain:A ((1-133))
SHSGVNQLGGVFVNGRPLPDSTRQRIVELAHSGARPCDISRILQVSNGCVSKILGRYYAT-GSIRPRAI-----GGSKPRVATPEVVSKIAQYKQECPSIFAWEIRDRLLSEGVCTNDNIP-----------SVSSINRVLRNLASEKQQ
General information:
TITO was launched using:
RESULT:
Template:
6PAX.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -21773 for 578 contacts (-37.7/contact) +
2D Compatibility (PS) -9889 + (NN) -1498 + (LL) 1680
1D Compatibility (HY) -5200 + (ID) 1200
Total energy: -37880.0 ( -65.54 by residue)
QMean score : 0.512
(partial model without unconserved sides chains):
PDB file :
Tito_6PAX.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-6PAX-query.scw
PDB file :
Tito_Scwrl_6PAX.pdb
: