Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MLKFENVTKSFKDGNRNIEAVKDTNFEINKGDIIALVGPSGSGKSTFLTMAGALQTPTSGHILINNQDITTMKQKALAKVRMSEIGFILQATNLVPFLTVKQQFTLLKKKNKNVMSNEDYQ-QLMSQLGLTSLLNKLPSEISGGQKQRVAIAKALYTNPSIILADEPTAALDTENAIEVIKILRDQAKKRKKACIIVTHDERLKAYCDRSYHMKDGVLNLENETVE
3J15 Chain:B ((364-517))
--------------------------EIRKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKV---EWDLTVAYKPQYIKAEYEG--------------TV---YELLSKIDSSKLNSNFYKTELLKPLGIIDLYDRNVEDLSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEHD--------------------------
General information:
TITO was launched using:
RESULT:
Template:
3J15.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -61130 for 1094 contacts (-55.9/contact) +
2D Compatibility (PS) -16694 + (NN) -7734 + (LL) 5260
1D Compatibility (HY) -13200 + (ID) 2800
Total energy: -96298.0 ( -88.02 by residue)
QMean score : 0.481
(partial model without unconserved sides chains):
PDB file :
Tito_3J15.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3J15-query.scw
PDB file :
Tito_Scwrl_3J15.pdb
: