Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKKVLIINGAKAFGHSGG--KLNETLTHHAKKILESL--GLEVDTTIVDK---G--------------------------------YEKSQEVEKFFSADATIWQMPGWWMGEPWIVKKYIDEVFTSGHGKLYASDGRSSQNPTKNYGKGGLMQGKKYMLSLTWNAPIEAFNDPSEFFEGVGVDVVYLHLHKAFQFLGLSALPTFICNDVMKNPQ-VEQYLNSLTVHLRQAFGK
2HPV Chain:A ((2-204))
-SKLLVVKAHPL----TKEESRSVRALETFLASYRETNPSDEIEILDVYAPETNMPEIDEELLSAWGALRAGAAFETLSENQQQKVARFNELTDQFLSADKVVIANPMWNLNVPTRLKAWVDTINVAGKTFQYTAE-----------GPKPLTSGKKALHIQSNGGFYEGKD--------F----ASQYIKAILNFIGVDQVDGLFIEGIDHFPDRAEELLNTAMTKATEYGKT
General information:
TITO was launched using:
RESULT:
Template:
2HPV.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -78701 for 1251 contacts (-62.9/contact) +
2D Compatibility (PS) -17933 + (NN) -10352 + (LL) 276
1D Compatibility (HY) -2400 + (ID) 1350
Total energy: -110460.0 ( -88.30 by residue)
QMean score : 0.489
(partial model without unconserved sides chains):
PDB file :
Tito_2HPV.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2HPV-query.scw
PDB file :
Tito_Scwrl_2HPV.pdb
: